STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NRI_09003-dehydroquinate synthase; Identified by match to protein family HMM PF01761. (376 aa)    
Predicted Functional Partners:
gpsA
Glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase); Identified by match to protein family HMM PF01210; match to protein family HMM PF02558; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
    
 0.917
plsC
Identified by match to protein family HMM PF01553.
     
 0.815
NRI_0901
TPR repeat region superfamily; Identified by match to protein family HMM PF03937.
       0.777
aprE
Secretion protein, HlyD family; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843.
       0.478
NRI_0634
Acetyltransferase, gnat family; Identified by match to protein family HMM PF00583.
 
     0.456
NRI_0830
Type IV secretion system protein VirB6; Identified by match to protein family HMM PF04610.
  
     0.434
NRI_0817
Class II aldolase/adducin domain protein; Identified by match to protein family HMM PF00596.
  
  
 0.421
Your Current Organism:
Neorickettsia risticii
NCBI taxonomy Id: 434131
Other names: N. risticii str. Illinois, Neorickettsia risticii str. Illinois, Neorickettsia risticii strain Illinois
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