Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BVU_0004 | BVU_0426 | Putative exported protein. | Conserved hypothetical protein. | 0.592 |
BVU_0004 | BVU_1598 | Putative exported protein. | Transposase. | 0.626 |
BVU_0004 | BVU_1722 | Putative exported protein. | Putative transcriptional regulator UpxY-like protein. | 0.686 |
BVU_0004 | BVU_2229 | Putative exported protein. | Glycoside hydrolase family 43; Related to beta-glycosidases. | 0.561 |
BVU_0004 | BVU_2466 | Putative exported protein. | Conserved hypothetical protein. | 0.725 |
BVU_0004 | BVU_2467 | Putative exported protein. | Conserved hypothetical protein. | 0.631 |
BVU_0004 | BVU_2481 | Putative exported protein. | Conserved hypothetical protein. | 0.585 |
BVU_0004 | BVU_2508 | Putative exported protein. | Conserved hypothetical protein. | 0.643 |
BVU_0004 | BVU_3454 | Putative exported protein. | Putative transcriptional regulator UpxY-like protein. | 0.650 |
BVU_0004 | BVU_4085 | Putative exported protein. | Conserved hypothetical protein. | 0.665 |
BVU_0426 | BVU_0004 | Conserved hypothetical protein. | Putative exported protein. | 0.592 |
BVU_1598 | BVU_0004 | Transposase. | Putative exported protein. | 0.626 |
BVU_1722 | BVU_0004 | Putative transcriptional regulator UpxY-like protein. | Putative exported protein. | 0.686 |
BVU_1722 | BVU_2229 | Putative transcriptional regulator UpxY-like protein. | Glycoside hydrolase family 43; Related to beta-glycosidases. | 0.619 |
BVU_1722 | BVU_2466 | Putative transcriptional regulator UpxY-like protein. | Conserved hypothetical protein. | 0.667 |
BVU_1722 | BVU_2467 | Putative transcriptional regulator UpxY-like protein. | Conserved hypothetical protein. | 0.489 |
BVU_2229 | BVU_0004 | Glycoside hydrolase family 43; Related to beta-glycosidases. | Putative exported protein. | 0.561 |
BVU_2229 | BVU_1722 | Glycoside hydrolase family 43; Related to beta-glycosidases. | Putative transcriptional regulator UpxY-like protein. | 0.619 |
BVU_2229 | BVU_2466 | Glycoside hydrolase family 43; Related to beta-glycosidases. | Conserved hypothetical protein. | 0.557 |
BVU_2229 | BVU_2467 | Glycoside hydrolase family 43; Related to beta-glycosidases. | Conserved hypothetical protein. | 0.509 |
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