STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0039Glycoside hydrolase family 43, candidate beta-xylosidase/alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family. (578 aa)    
Predicted Functional Partners:
BVU_2169
Glycoside hydrolase family 43; Related to beta-xylosidases/alpha-L-arabinofuranosidases; Belongs to the glycosyl hydrolase 43 family.
  
  
 
0.929
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.858
BVU_0041
Glycoside hydrolase family 10, candidate beta-xylanase.
 
   
 0.846
uxaC
Uronate isomerase.
    
 0.810
BVU_0040
Glycoside hydrolase family 43, candidate beta-xylosidase/alpha-L-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.796
BVU_0030
Conserved hypothetical protein.
 
     0.760
BVU_0037
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.731
BVU_0154
Conserved hypothetical protein.
 
     0.724
BVU_2172
Conserved hypothetical protein.
 
     0.718
BVU_0038
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.717
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.