STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0261Conserved hypothetical protein. (391 aa)    
Predicted Functional Partners:
BVU_0260
Conserved hypothetical protein.
 
  
 0.968
BVU_0262
Putative transport-related membrane protein.
    
0.918
BVU_3576
Conserved hypothetical protein, putative membrane protein.
 
  
 0.804
BVU_0263
Lipoprotein.
       0.634
BVU_3332
Putative ABC transporter permease protein.
  
     0.580
BVU_1838
Conserved hypothetical protein.
  
     0.504
BVU_0375
Conserved hypothetical protein.
  
    0.486
BVU_2511
ABC transporter ATP-binding protein.
  
  
 0.477
BVU_3574
Conserved hypothetical protein.
  
0.477
BVU_3631
ATP-binding protein.
  
  
 0.477
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.