STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0306Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (193 aa)    
Predicted Functional Partners:
BVU_0305
Putative anti-sigma factor.
 
   0.848
BVU_0108
Putative anti-sigma factor.
 
   0.698
BVU_0610
Putative anti-sigma factor.
 
   0.687
BVU_2205
Putative anti-sigma factor.
 
   0.684
BVU_2919
ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.684
BVU_0052
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.680
BVU_1710
Putative anti-sigma factor.
 
   0.680
BVU_1057
Putative anti-sigma factor.
 
   0.673
BVU_4114
Putative anti-sigma factor.
 
   0.672
BVU_0366
Conserved hypothetical protein, putative anti-sigma factor.
 
   0.671
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.