STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0604Transcriptional regulator. (306 aa)    
Predicted Functional Partners:
BVU_0605
Glycoside hydrolase family 23; Related to peptidoglycan lytic transglycosylases.
       0.773
BVU_0597
L-rhamnose/H+ symporter.
 
  
 0.728
BVU_4123
Transcriptional regulator.
  
     0.634
BVU_4079
Transcriptional regulator.
  
     0.597
BVU_0598
Rhamnulose-1-phosphate aldolase.
 
   
 0.578
BVU_0603
Two-component system sensor histidine kinase/response regulator, hybrid.
  
  
 0.558
BVU_0595
Rhamnulose kinase/L-fuculose kinase.
 
   
 0.471
BVU_2731
Glycoside hydrolase family 78; Related to alpha-L-rhamnosidases.
 
     0.444
BVU_0372
Transcriptional regulator.
  
     0.435
BVU_2645
Glycoside hydrolase family 78; Modular protein with N-terminal candidate rhamnosidase domain and C-terminal domain related to sialidases.
  
     0.435
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.