STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0726Conserved hypothetical protein. (193 aa)    
Predicted Functional Partners:
BVU_0727
Conserved hypothetical protein.
 
   
 0.928
BVU_3377
Conserved hypothetical protein.
  
     0.648
BVU_3380
Conserved protein found in conjugate transposon TraM.
  
     0.595
BVU_1590
Conserved hypothetical protein.
 
     0.592
BVU_0646
Conserved hypothetical protein.
  
     0.589
BVU_3430
DNA primase.
 
     0.583
BVU_3365
Putative mobilization protein.
 
     0.582
BVU_3359
Transposase.
 
     0.577
BVU_3389
Putative DNA mismatch repair protein mutS.
 
     0.571
BVU_0725
DNA primase.
 
     0.545
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.