STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0774Conserved hypothetical protein. (152 aa)    
Predicted Functional Partners:
BVU_0773
Conserved hypothetical protein.
 
   
 0.880
BVU_0772
Putative RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.784
BVU_0830
Hypothetical protein.
  
     0.649
BVU_1489
Conserved hypothetical protein.
  
     0.593
BVU_0865
Conserved hypothetical protein.
  
     0.580
BVU_3216
Hypothetical protein.
  
     0.564
BVU_0765
Conserved hypothetical protein.
  
     0.550
BVU_0562
Conserved hypothetical protein.
  
     0.522
BVU_1677
Conserved hypothetical protein.
  
     0.511
BVU_1028
Conserved hypothetical protein.
  
     0.503
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.