STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_0948Conserved hypothetical protein. (450 aa)    
Predicted Functional Partners:
BVU_0947
Putative outer membrane protein, probably involved in nutrient binding.
 
     0.900
BVU_0946
Putative outer membrane protein, probably involved in nutrient binding.
 
    0.880
BVU_0949
Conserved hypothetical protein.
 
  
 0.832
BVU_0572
Conserved hypothetical protein.
  
     0.734
glaB1
Conserved hypothetical protein, possible ATP/GTP-binding site; Alpha-galactosidase. Removes both branched alpha-1,3-linked galactose residues of blood group B antigens and linear alpha-1,3- linked galactose structures.
  
     0.681
glaB2
Conserved hypothetical protein, possible ATP/GTP-binding site; Alpha-galactosidase. Removes both branched alpha-1,3-linked galactose residues of blood group B antigens and linear alpha-1,3- linked galactose structures; Belongs to the glycosyl hydrolase 110 family. B subfamily.
  
     0.669
BVU_0571
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.620
BVU_2763
Conserved hypothetical protein.
  
     0.613
BVU_0441
Putative helicase.
  
     0.589
BVU_0763
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.568
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.