STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_1141Conserved hypothetical protein. (690 aa)    
Predicted Functional Partners:
BVU_1140
Putative Fe-S oxidoreductase.
       0.777
BVU_1317
Leucine aminopeptidase precursor.
 
     0.712
BVU_2560
Peptidyl-prolyl cis-trans isomerase.
 
     0.659
BVU_2976
Outer membrane protein TonB.
  
     0.658
BVU_1410
TPR domain protein.
 
   
 0.656
BVU_1491
Conserved hypothetical protein.
  
     0.649
BVU_2370
Conserved hypothetical protein.
 
     0.643
BVU_0021
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.626
BVU_0026
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.595
BVU_3041
Conserved hypothetical protein.
  
   
 0.571
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.