STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_1196Glycoside hydrolase family 20; Related to beta-N-acetylhexosaminidases. (659 aa)    
Predicted Functional Partners:
BVU_1273
Glycoside hydrolase family 18; Related to chitinases; Belongs to the glycosyl hydrolase 18 family.
 
 
 0.937
BVU_4118
Renin-binding protein-related protein.
 
  
  0.920
BVU_2069
Glycoside hydrolase family 84; Related to beta-N-acetylhexosaminidases.
 
     0.723
BVU_1860
Glycoside hydrolase family 89; Related to alpha-N-acetylglucosaminidases.
 
 
 0.660
mutS
Putative DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.
       0.654
BVU_0392
Glycoside hydrolase family 20; Distantly related to beta-N-acetylhexosaminidases.
  
     0.630
BVU_2198
Conserved hypothetical protein.
 
    0.573
BVU_0044
Glycoside hydrolase family 16, candidate beta-glycosidase.
 
     0.558
BVU_0495
Glycoside hydrolase family 35, candidate beta-glycosidase; Related to beta-galactosidases; Belongs to the glycosyl hydrolase 35 family.
 
  
 0.510
BVU_4143
Glycoside hydrolase family 33, candidate sialidase.
 
 
 0.468
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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