STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_1239Putative cytochrome B subunit. (228 aa)    
Predicted Functional Partners:
BVU_1240
Fumarate reductase flavoprotein subunit.
 
 
 0.998
BVU_1241
Fumarate reductase iron-sulfur cluster protein subunit.
 
 
 0.997
BVU_1859
Anaerobic fumarate hydratase class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
 0.915
BVU_0144
Aspartate aminotransferase.
     
  0.800
argH
Argininosuccinate lyase.
     
  0.800
BVU_3865
Aspartate aminotransferase.
     
  0.800
BVU_1238
Conserved hypothetical protein.
       0.706
BVU_1163
Putative coenzyme A transferase.
     
 0.510
BVU_2798
Cytochrome D ubiquinol oxidase subunit II.
     
  0.499
BVU_2799
Cytochrome D ubiquinol oxidase subunit I.
     
  0.499
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.