Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVU_1418 | BVU_1419 | BVU_1418 | BVU_1419 | Conserved hypothetical protein. | RNA polymerase sigma-54. | 0.852 |
BVU_1418 | gcvH | BVU_1418 | BVU_1417 | Conserved hypothetical protein. | Putative glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.796 |
BVU_1419 | BVU_1418 | BVU_1419 | BVU_1418 | RNA polymerase sigma-54. | Conserved hypothetical protein. | 0.852 |
BVU_1419 | BVU_2176 | BVU_1419 | BVU_2176 | RNA polymerase sigma-54. | Putative regulatory protein. | 0.797 |
BVU_1419 | BVU_2609 | BVU_1419 | BVU_2609 | RNA polymerase sigma-54. | Transcriptional regulator. | 0.857 |
BVU_1419 | BVU_3042 | BVU_1419 | BVU_3042 | RNA polymerase sigma-54. | Conserved hypothetical protein. | 0.891 |
BVU_1419 | BVU_3176 | BVU_1419 | BVU_3176 | RNA polymerase sigma-54. | Putative two-component system response regulator. | 0.795 |
BVU_1419 | BVU_3527 | BVU_1419 | BVU_3527 | RNA polymerase sigma-54. | Two-component system response regulator. | 0.795 |
BVU_1419 | gcvH | BVU_1419 | BVU_1417 | RNA polymerase sigma-54. | Putative glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.813 |
BVU_1419 | rpoA | BVU_1419 | BVU_0780 | RNA polymerase sigma-54. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.924 |
BVU_1419 | rpoB | BVU_1419 | BVU_0813 | RNA polymerase sigma-54. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.898 |
BVU_1419 | rpoC | BVU_1419 | BVU_0812 | RNA polymerase sigma-54. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.919 |
BVU_2176 | BVU_1419 | BVU_2176 | BVU_1419 | Putative regulatory protein. | RNA polymerase sigma-54. | 0.797 |
BVU_2609 | BVU_1419 | BVU_2609 | BVU_1419 | Transcriptional regulator. | RNA polymerase sigma-54. | 0.857 |
BVU_3042 | BVU_1419 | BVU_3042 | BVU_1419 | Conserved hypothetical protein. | RNA polymerase sigma-54. | 0.891 |
BVU_3042 | rpoA | BVU_3042 | BVU_0780 | Conserved hypothetical protein. | DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
BVU_3042 | rpoB | BVU_3042 | BVU_0813 | Conserved hypothetical protein. | DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.994 |
BVU_3042 | rpoC | BVU_3042 | BVU_0812 | Conserved hypothetical protein. | DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.989 |
BVU_3176 | BVU_1419 | BVU_3176 | BVU_1419 | Putative two-component system response regulator. | RNA polymerase sigma-54. | 0.795 |
BVU_3527 | BVU_1419 | BVU_3527 | BVU_1419 | Two-component system response regulator. | RNA polymerase sigma-54. | 0.795 |
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