STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_1536Putative LPS biosynthesis related polysaccharide transporter/flippase. (447 aa)    
Predicted Functional Partners:
BVU_1538
Putative glycosyltransferase.
 
  
 0.888
BVU_1539
Putative dehydratase.
  
  
 0.824
BVU_1537
Hypothetical protein.
       0.783
BVU_1540
Putative epimerase/dehydratase.
  
  
 0.724
BVU_1542
Putative UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.585
BVU_3154
UDP-glucose 6-dehydrogenase.
  
  
 0.554
BVU_1063
Putative LPS biosynthesis related UDP-galactopyranose mutase.
  
  
 0.553
BVU_2406
Glycosyltransferase.
  
  
 0.553
BVU_2676
Glycosyltransferase.
  
  
 0.553
BVU_3948
Glycosyltransferase.
  
  
 0.553
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.