STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_1814Conserved hypothetical protein. (386 aa)    
Predicted Functional Partners:
BVU_1815
Carbohydrate esterase family 8; Modular protein with N-terminal domain distantly related to pectin acetylesterases and C-terminal domain related to pectin methylesterases.
 
   
 0.849
BVU_1813
Polysaccharide lyase family 10; Related to pectate lyases.
       0.718
BVU_1816
Two-component system sensor histidine kinase/response regulator, hybrid.
  
    0.688
BVU_1812
Putative pectin degradation protein.
  
    0.555
BVU_1454
Conserved hypothetical protein.
  
     0.553
BVU_2352
ABC transporter permease.
 
     0.532
BVU_2348
Putative ABC transporter permease component.
 
     0.529
BVU_2508
Conserved hypothetical protein.
  
     0.525
BVU_1343
cephalosporin-C deacetylase.
 
     0.482
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.