Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVU_0442 | BVU_1955 | BVU_0442 | BVU_1955 | ATP-dependent DNA helicase recQ. | Putative DNA topoisomerase. | 0.679 |
BVU_0442 | BVU_2638 | BVU_0442 | BVU_2638 | ATP-dependent DNA helicase recQ. | ATP-dependent DNA helicase. | 0.632 |
BVU_0442 | polA | BVU_0442 | BVU_1207 | ATP-dependent DNA helicase recQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.709 |
BVU_0442 | recA | BVU_0442 | BVU_2377 | ATP-dependent DNA helicase recQ. | RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.599 |
BVU_0503 | BVU_0504 | BVU_0503 | BVU_0504 | DNA repair and recombination protein, putative helicase. | Putative helicase. | 0.910 |
BVU_0503 | BVU_1955 | BVU_0503 | BVU_1955 | DNA repair and recombination protein, putative helicase. | Putative DNA topoisomerase. | 0.771 |
BVU_0503 | BVU_2638 | BVU_0503 | BVU_2638 | DNA repair and recombination protein, putative helicase. | ATP-dependent DNA helicase. | 0.955 |
BVU_0503 | polA | BVU_0503 | BVU_1207 | DNA repair and recombination protein, putative helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.855 |
BVU_0503 | recA | BVU_0503 | BVU_2377 | DNA repair and recombination protein, putative helicase. | RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.921 |
BVU_0504 | BVU_0503 | BVU_0504 | BVU_0503 | Putative helicase. | DNA repair and recombination protein, putative helicase. | 0.910 |
BVU_0504 | BVU_1955 | BVU_0504 | BVU_1955 | Putative helicase. | Putative DNA topoisomerase. | 0.679 |
BVU_0504 | BVU_2638 | BVU_0504 | BVU_2638 | Putative helicase. | ATP-dependent DNA helicase. | 0.955 |
BVU_0504 | polA | BVU_0504 | BVU_1207 | Putative helicase. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.855 |
BVU_0504 | recA | BVU_0504 | BVU_2377 | Putative helicase. | RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.921 |
BVU_1955 | BVU_0442 | BVU_1955 | BVU_0442 | Putative DNA topoisomerase. | ATP-dependent DNA helicase recQ. | 0.679 |
BVU_1955 | BVU_0503 | BVU_1955 | BVU_0503 | Putative DNA topoisomerase. | DNA repair and recombination protein, putative helicase. | 0.771 |
BVU_1955 | BVU_0504 | BVU_1955 | BVU_0504 | Putative DNA topoisomerase. | Putative helicase. | 0.679 |
BVU_1955 | BVU_2013 | BVU_1955 | BVU_2013 | Putative DNA topoisomerase. | Putative ATP-dependent DNA helicase. | 0.785 |
BVU_1955 | BVU_2070 | BVU_1955 | BVU_2070 | Putative DNA topoisomerase. | ATP-dependent DNA helicase RecQ. | 0.676 |
BVU_1955 | BVU_2638 | BVU_1955 | BVU_2638 | Putative DNA topoisomerase. | ATP-dependent DNA helicase. | 0.907 |
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