STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_2057Outer membrane vitamin B12 receptor protein. (673 aa)    
Predicted Functional Partners:
BVU_2056
Putative outer membrane protein, probably involved in nutrient binding.
 
    0.952
BVU_2055
Putative iron-related ABC transport periplasmic binding protein.
  
  
 0.715
BVU_2698
Conserved hypothetical protein.
  
     0.545
BVU_2914
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.522
BVU_0569
Conserved hypothetical protein.
  
 
   0.518
BVU_2054
iron(III) ABC transporter putative permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
    0.514
BVU_2053
iron(III) ABC transporter ATP-binding protein.
       0.507
BVU_0947
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.506
BVU_2125
Conserved protein found in conjugate transposon.
  
     0.501
BVU_1254
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.496
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.