STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_2471Conserved hypothetical protein. (180 aa)    
Predicted Functional Partners:
BVU_2470
Putative transposase; Belongs to the 'phage' integrase family.
 
     0.676
BVU_4007
Glutamate synthase, large subunit.
   
 
 0.601
BVU_3207
Conserved hypothetical protein.
  
     0.458
BVU_1022
Conserved hypothetical protein.
  
     0.449
BVU_1498
Conserved hypothetical protein.
 
     0.449
BVU_1483
Putative peptidase/deacetylase.
   
 
 0.436
BVU_2536
Putative peptidase.
   
 
 0.436
BVU_2472
Putative DNA repair protein.
       0.419
BVU_3429
Transcriptional regulator.
 
     0.407
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.