STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_2506Putative outer membrane receptor protein. (911 aa)    
Predicted Functional Partners:
BVU_2507
Putative lipoprotein.
 
     0.957
BVU_2508
Conserved hypothetical protein.
 
     0.942
BVU_2512
Conserved hypothetical protein.
 
    0.897
BVU_2511
ABC transporter ATP-binding protein.
 
    0.885
BVU_2513
Conserved hypothetical protein.
 
    0.875
BVU_2510
Putative membrane protein.
 
     0.873
BVU_2509
Conserved hypothetical protein.
       0.730
BVU_2987
Putative periplasmic protein.
  
     0.608
BVU_2443
Conserved hypothetical protein.
  
     0.606
BVU_3108
TonB-dependent receptor.
  
    0.545
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.