Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVU_0092 | BVU_2538 | BVU_0092 | BVU_2538 | Putative phosphoribosylformylglycinamidine cyclo-ligase. | Conserved hypothetical protein. | 0.454 |
BVU_0092 | BVU_2539 | BVU_0092 | BVU_2539 | Putative phosphoribosylformylglycinamidine cyclo-ligase. | Conserved hypothetical protein. | 0.454 |
BVU_0092 | BVU_2540 | BVU_0092 | BVU_2540 | Putative phosphoribosylformylglycinamidine cyclo-ligase. | Conserved hypothetical protein. | 0.454 |
BVU_0092 | BVU_2541 | BVU_0092 | BVU_2541 | Putative phosphoribosylformylglycinamidine cyclo-ligase. | Shikimate 5-dehydrogenase. | 0.506 |
BVU_0092 | menG | BVU_0092 | BVU_2542 | Putative phosphoribosylformylglycinamidine cyclo-ligase. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.448 |
BVU_0092 | prfA | BVU_0092 | BVU_0094 | Putative phosphoribosylformylglycinamidine cyclo-ligase. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.883 |
BVU_0092 | purC | BVU_0092 | BVU_2543 | Putative phosphoribosylformylglycinamidine cyclo-ligase. | Phosphoribosylamidoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family. | 0.980 |
BVU_2536 | BVU_2538 | BVU_2536 | BVU_2538 | Putative peptidase. | Conserved hypothetical protein. | 0.678 |
BVU_2536 | BVU_2539 | BVU_2536 | BVU_2539 | Putative peptidase. | Conserved hypothetical protein. | 0.638 |
BVU_2536 | BVU_2540 | BVU_2536 | BVU_2540 | Putative peptidase. | Conserved hypothetical protein. | 0.431 |
BVU_2536 | BVU_2541 | BVU_2536 | BVU_2541 | Putative peptidase. | Shikimate 5-dehydrogenase. | 0.424 |
BVU_2536 | aroC | BVU_2536 | BVU_2537 | Putative peptidase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.858 |
BVU_2536 | menG | BVU_2536 | BVU_2542 | Putative peptidase. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2). | 0.548 |
BVU_2538 | BVU_0092 | BVU_2538 | BVU_0092 | Conserved hypothetical protein. | Putative phosphoribosylformylglycinamidine cyclo-ligase. | 0.454 |
BVU_2538 | BVU_2536 | BVU_2538 | BVU_2536 | Conserved hypothetical protein. | Putative peptidase. | 0.678 |
BVU_2538 | BVU_2539 | BVU_2538 | BVU_2539 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.960 |
BVU_2538 | BVU_2540 | BVU_2538 | BVU_2540 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.792 |
BVU_2538 | BVU_2541 | BVU_2538 | BVU_2541 | Conserved hypothetical protein. | Shikimate 5-dehydrogenase. | 0.792 |
BVU_2538 | BVU_2544 | BVU_2538 | BVU_2544 | Conserved hypothetical protein. | Phosphate starvation-inducible protein PhoH. | 0.658 |
BVU_2538 | aroC | BVU_2538 | BVU_2537 | Conserved hypothetical protein. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.673 |
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