STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_2732Glycoside hydrolase family 28, candidate polygalacturonase; Belongs to the glycosyl hydrolase 28 family. (446 aa)    
Predicted Functional Partners:
BVU_2733
Conserved hypothetical protein.
     0.859
BVU_0182
Carbohydrate esterase family 12; Related to pectin acetylesterases.
   0.837
BVU_2643
Conserved hypothetical protein.
     0.822
BVU_1815
Carbohydrate esterase family 8; Modular protein with N-terminal domain distantly related to pectin acetylesterases and C-terminal domain related to pectin methylesterases.
 
 0.819
BVU_2731
Glycoside hydrolase family 78; Related to alpha-L-rhamnosidases.
  
  
 0.815
BVU_1872
Conserved hypothetical protein.
     0.807
BVU_1797
Conserved hypothetical protein.
     0.793
BVU_2160
Carbohydrate esterase family 12; Distantly related to pectin acetylesterases.
   0.772
BVU_1798
Carbohydrate esterase family 8; Related to pectin methylesterases.
 
   
 0.769
BVU_2730
Conserved hypothetical protein.
 
    0.746
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.