STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_2799Cytochrome D ubiquinol oxidase subunit I. (500 aa)    
Predicted Functional Partners:
BVU_2798
Cytochrome D ubiquinol oxidase subunit II.
 
 
 0.999
BVU_3604
Putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.690
BVU_1240
Fumarate reductase flavoprotein subunit.
     
 0.604
BVU_2800
Outer membrane efflux protein.
       0.601
BVU_2422
Pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.577
BVU_1241
Fumarate reductase iron-sulfur cluster protein subunit.
     
 0.576
BVU_2803
ABC transporter permease protein.
       0.565
BVU_2801
Periplasmic component of efflux system; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
    0.522
BVU_1239
Putative cytochrome B subunit.
     
  0.499
panD
Aspartate 1-decarboxylase precursor; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
   
  
 0.478
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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