STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_3004Conserved hypothetical protein. (453 aa)    
Predicted Functional Partners:
BVU_3003
Conserved hypothetical protein.
 
  
 0.971
BVU_0890
Conserved hypothetical protein, putative glycosyltransferase.
  
     0.609
BVU_3005
Conserved hypothetical protein.
 
     0.578
BVU_2827
Conserved hypothetical protein.
  
     0.558
BVU_1482
Hypothetical protein.
  
     0.533
BVU_3002
Putative methyltransferase.
 
     0.532
BVU_0121
Glycoside hydrolase family 28; Distantly related to polygalacturonases; Belongs to the glycosyl hydrolase 28 family.
  
     0.509
BVU_2306
Conserved hypothetical protein.
  
     0.489
BVU_2833
Conserved hypothetical protein.
  
     0.480
BVU_3229
Conserved hypothetical protein.
  
     0.447
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.