STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_3289Aerotolerance-related membrane protein. (340 aa)    
Predicted Functional Partners:
BVU_3290
Conserved hypothetical protein BatC.
   
 0.989
BVU_3286
Conserved hypothetical protein.
 
  
 0.962
BVU_3287
Conserved hypothetical protein.
 
  
 0.955
BVU_3291
BatD, conserved hypothetical protein.
 
   
 0.955
BVU_3292
BatE, TRP domain containing protein.
 
   
 0.941
BVU_3285
Magnesium chelatase, subunit I.
 
  
 0.923
BVU_3288
Conserved hypothetical protein BatA.
 
  
0.883
BVU_3293
Putative membrane-associated phospholipid phosphatase.
  
    0.748
BVU_3294
Conserved hypothetical protein.
       0.641
BVU_3295
Putative universal stress protein UspA.
       0.596
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.