Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVU_0396 | BVU_3793 | BVU_0396 | BVU_3793 | NADH-ubiquinone oxidoreductase subunit. | Hypothetical protein. | 0.706 |
BVU_0396 | atpA | BVU_0396 | BVU_3000 | NADH-ubiquinone oxidoreductase subunit. | ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.642 |
BVU_0396 | atpH | BVU_0396 | BVU_2999 | NADH-ubiquinone oxidoreductase subunit. | ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | 0.820 |
BVU_0396 | nuoB | BVU_0396 | BVU_1758 | NADH-ubiquinone oxidoreductase subunit. | NADH dehydrogenase I chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.991 |
BVU_0396 | nuoC | BVU_0396 | BVU_1757 | NADH-ubiquinone oxidoreductase subunit. | NADH dehydrogenase I, chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity); In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.999 |
BVU_0396 | rnfB | BVU_0396 | BVU_3890 | NADH-ubiquinone oxidoreductase subunit. | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.865 |
BVU_3793 | BVU_0396 | BVU_3793 | BVU_0396 | Hypothetical protein. | NADH-ubiquinone oxidoreductase subunit. | 0.706 |
BVU_3793 | BVU_3794 | BVU_3793 | BVU_3794 | Hypothetical protein. | Conserved hypothetical protein. | 0.727 |
BVU_3793 | BVU_3795 | BVU_3793 | BVU_3795 | Hypothetical protein. | Hypothetical protein. | 0.653 |
BVU_3793 | BVU_3796 | BVU_3793 | BVU_3796 | Hypothetical protein. | Hypothetical protein. | 0.651 |
BVU_3793 | BVU_3797 | BVU_3793 | BVU_3797 | Hypothetical protein. | Hypothetical protein. | 0.637 |
BVU_3793 | atpA | BVU_3793 | BVU_3000 | Hypothetical protein. | ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.592 |
BVU_3793 | atpH | BVU_3793 | BVU_2999 | Hypothetical protein. | ATP synthase delta chain; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | 0.639 |
BVU_3793 | nuoB | BVU_3793 | BVU_1758 | Hypothetical protein. | NADH dehydrogenase I chain B; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. | 0.590 |
BVU_3793 | nuoC | BVU_3793 | BVU_1757 | Hypothetical protein. | NADH dehydrogenase I, chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient (By similarity); In the N-terminal section; belongs to the complex I 30 kDa subunit family. | 0.984 |
BVU_3793 | rnfB | BVU_3793 | BVU_3890 | Hypothetical protein. | Electron transport complex protein RnfB; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.560 |
BVU_3794 | BVU_3793 | BVU_3794 | BVU_3793 | Conserved hypothetical protein. | Hypothetical protein. | 0.727 |
BVU_3794 | BVU_3795 | BVU_3794 | BVU_3795 | Conserved hypothetical protein. | Hypothetical protein. | 0.671 |
BVU_3794 | BVU_3796 | BVU_3794 | BVU_3796 | Conserved hypothetical protein. | Hypothetical protein. | 0.671 |
BVU_3794 | BVU_3797 | BVU_3794 | BVU_3797 | Conserved hypothetical protein. | Hypothetical protein. | 0.664 |
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