STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_3894Putative sugar transporter. (396 aa)    
Predicted Functional Partners:
BVU_3893
Putative permease.
 
     0.920
BVU_0413
Conserved hypothetical protein; Belongs to the UPF0246 family.
  
    0.768
BVU_3895
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
 
     0.755
BVU_2435
Conserved hypothetical protein.
  
     0.751
BVU_3900
Putative potassium channel subunit.
 
    0.741
BVU_3901
Glutamate/gamma-aminobutyrate anti-porter.
 
     0.701
BVU_2261
Conserved hypothetical protein.
  
     0.684
BVU_1722
Putative transcriptional regulator UpxY-like protein.
  
     0.639
BVU_0539
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.611
BVU_3454
Putative transcriptional regulator UpxY-like protein.
  
     0.608
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.