Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BVU_2838 | BVU_2952 | BVU_2838 | BVU_2952 | Putative nucleotide sugar epimerase. | Putative epimerase/dehydratase. | 0.935 |
BVU_2838 | BVU_3154 | BVU_2838 | BVU_3154 | Putative nucleotide sugar epimerase. | UDP-glucose 6-dehydrogenase. | 0.963 |
BVU_2838 | BVU_3987 | BVU_2838 | BVU_3987 | Putative nucleotide sugar epimerase. | Putative UDP-glucose 4-epimerase. | 0.939 |
BVU_2838 | rpsC | BVU_2838 | BVU_0799 | Putative nucleotide sugar epimerase. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.572 |
BVU_2838 | rpsL | BVU_2838 | BVU_0809 | Putative nucleotide sugar epimerase. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.580 |
BVU_2838 | rpsN | BVU_2838 | BVU_0792 | Putative nucleotide sugar epimerase. | 30S ribosomal protein S14-like protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.598 |
BVU_2838 | rpsQ | BVU_2838 | BVU_0796 | Putative nucleotide sugar epimerase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.567 |
BVU_2838 | rpsS | BVU_2838 | BVU_0801 | Putative nucleotide sugar epimerase. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.594 |
BVU_2952 | BVU_2838 | BVU_2952 | BVU_2838 | Putative epimerase/dehydratase. | Putative nucleotide sugar epimerase. | 0.935 |
BVU_2952 | BVU_3154 | BVU_2952 | BVU_3154 | Putative epimerase/dehydratase. | UDP-glucose 6-dehydrogenase. | 0.946 |
BVU_2952 | BVU_3987 | BVU_2952 | BVU_3987 | Putative epimerase/dehydratase. | Putative UDP-glucose 4-epimerase. | 0.925 |
BVU_2952 | rpsC | BVU_2952 | BVU_0799 | Putative epimerase/dehydratase. | 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.572 |
BVU_2952 | rpsL | BVU_2952 | BVU_0809 | Putative epimerase/dehydratase. | 30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy. | 0.580 |
BVU_2952 | rpsN | BVU_2952 | BVU_0792 | Putative epimerase/dehydratase. | 30S ribosomal protein S14-like protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.598 |
BVU_2952 | rpsQ | BVU_2952 | BVU_0796 | Putative epimerase/dehydratase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.567 |
BVU_2952 | rpsS | BVU_2952 | BVU_0801 | Putative epimerase/dehydratase. | 30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.594 |
BVU_3154 | BVU_2838 | BVU_3154 | BVU_2838 | UDP-glucose 6-dehydrogenase. | Putative nucleotide sugar epimerase. | 0.963 |
BVU_3154 | BVU_2952 | BVU_3154 | BVU_2952 | UDP-glucose 6-dehydrogenase. | Putative epimerase/dehydratase. | 0.946 |
BVU_3154 | BVU_3987 | BVU_3154 | BVU_3987 | UDP-glucose 6-dehydrogenase. | Putative UDP-glucose 4-epimerase. | 0.981 |
BVU_3986 | BVU_3987 | BVU_3986 | BVU_3987 | Two-component system sensor histidine kinase. | Putative UDP-glucose 4-epimerase. | 0.856 |
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