STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BVU_4159Type I restriction enzyme EcoR124II specificity protein. (447 aa)    
Predicted Functional Partners:
BVU_4163
Type I restriction enzyme StySJI M protein.
 
 
 0.912
BVU_4164
Type I restriction enzyme EcoKI R protein.
 
 
 0.868
BVU_3687
Type I restriction enzyme EcoR124II M protein.
 
 
 0.850
BVU_3413
Type I restriction-modification system M subunit.
 
 
 0.802
BVU_3688
Type I restriction enzyme EcoR124II R protein; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.716
BVU_1577
Type I restriction enzyme, M subunit.
 
 
 0.664
BVU_3410
Type I restriction enzyme HsdR, putative.
 
  
 0.658
BVU_2111
Putative DNA methylase.
  
 
 0.625
BVU_2109
Conserved hypothetical protein.
  
 
 0.622
BVU_2110
Putative DNA methylase.
  
 
 0.622
Your Current Organism:
Bacteroides vulgatus
NCBI taxonomy Id: 435590
Other names: B. vulgatus ATCC 8482, Bacteroides vulgatus ATCC 8482, Bacteroides vulgatus str. ATCC 8482, Bacteroides vulgatus strain ATCC 8482
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.