Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BDI_0095 | BDI_0096 | Two-component system sensor histidine kinase. | Glycine betaine transport ATP-binding protein. | 0.461 |
BDI_0095 | BDI_0097 | Two-component system sensor histidine kinase. | Glycine betaine/L-proline transport system permease. | 0.461 |
BDI_0095 | BDI_0098 | Two-component system sensor histidine kinase. | Glycine betaine-binding protein precursor. | 0.412 |
BDI_0095 | BDI_0099 | Two-component system sensor histidine kinase. | Conserved hypothetical protein. | 0.412 |
BDI_0096 | BDI_0095 | Glycine betaine transport ATP-binding protein. | Two-component system sensor histidine kinase. | 0.461 |
BDI_0096 | BDI_0097 | Glycine betaine transport ATP-binding protein. | Glycine betaine/L-proline transport system permease. | 0.998 |
BDI_0096 | BDI_0098 | Glycine betaine transport ATP-binding protein. | Glycine betaine-binding protein precursor. | 0.996 |
BDI_0096 | BDI_0099 | Glycine betaine transport ATP-binding protein. | Conserved hypothetical protein. | 0.692 |
BDI_0096 | BDI_1925 | Glycine betaine transport ATP-binding protein. | Conserved hypothetical protein. | 0.800 |
BDI_0096 | BDI_3857 | Glycine betaine transport ATP-binding protein. | Glycine betaine-binding protein precursor. | 0.990 |
BDI_0096 | BDI_3858 | Glycine betaine transport ATP-binding protein. | Glycine betaine/L-proline transport system permease. | 0.992 |
BDI_0096 | BDI_3859 | Glycine betaine transport ATP-binding protein. | Glycine betaine transport ATP-binding protein. | 0.901 |
BDI_0097 | BDI_0095 | Glycine betaine/L-proline transport system permease. | Two-component system sensor histidine kinase. | 0.461 |
BDI_0097 | BDI_0096 | Glycine betaine/L-proline transport system permease. | Glycine betaine transport ATP-binding protein. | 0.998 |
BDI_0097 | BDI_0098 | Glycine betaine/L-proline transport system permease. | Glycine betaine-binding protein precursor. | 0.999 |
BDI_0097 | BDI_0099 | Glycine betaine/L-proline transport system permease. | Conserved hypothetical protein. | 0.692 |
BDI_0097 | BDI_1925 | Glycine betaine/L-proline transport system permease. | Conserved hypothetical protein. | 0.602 |
BDI_0097 | BDI_3857 | Glycine betaine/L-proline transport system permease. | Glycine betaine-binding protein precursor. | 0.997 |
BDI_0097 | BDI_3858 | Glycine betaine/L-proline transport system permease. | Glycine betaine/L-proline transport system permease. | 0.901 |
BDI_0097 | BDI_3859 | Glycine betaine/L-proline transport system permease. | Glycine betaine transport ATP-binding protein. | 0.992 |
page 1 of 3