Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_0141Conserved hypothetical protein. (337 aa)    
Predicted Functional Partners:
BDI_0142
Conserved hypothetical protein.
 
  
 0.956
BDI_0143
Putative transport-related membrane protein.
 
  
 0.947
BDI_0140
Putative alkaline protease AprF.
 
 
 0.846
BDI_1532
Conserved hypothetical protein.
 
  
 0.798
BDI_1533
Conserved hypothetical protein, putative transmembrane protein.
 
  
 0.789
BDI_1535
Putative outer membrane protein.
 
 
 0.572
BDI_1333
Putative ABC transporter permease protein.
 
  
 0.531
BDI_3352
Outer membrane efflux protein.
 
 
 0.518
BDI_0138
Conserved hypothetical protein.
       0.489
BDI_1332
Putative ABC transport system, membrane protein.
 
  
 0.481
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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