Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_0502Putative outer membrane protein, probably involved in nutrient binding. (1065 aa)    
Predicted Functional Partners:
BDI_0503
Conserved hypothetical protein.
 
     0.931
BDI_0499
Conserved hypothetical protein.
 
     0.831
BDI_0600
Conserved hypothetical protein.
 
     0.712
BDI_0491
Conserved hypothetical protein.
 
     0.694
BDI_1105
Putative outer membrane receptor protein involved in Fe transport.
  
    0.670
BDI_2894
Conserved hypothetical protein.
  
    0.640
BDI_3402
Conserved hypothetical protein.
  
  
 0.636
BDI_0496
Conserved hypothetical protein.
 
     0.610
BDI_2247
Putative mechano-sensitive ion channel.
  
     0.531
BDI_0233
Putative outer membrane protein, probably involved in nutrient binding.
  
 
   0.530
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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