Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDI_0187 | BDI_0259 | BDI_0187 | BDI_0259 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Putative threonine synthase. | 0.906 |
BDI_0187 | serC | BDI_0187 | BDI_0505 | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.914 |
BDI_0259 | BDI_0187 | BDI_0259 | BDI_0187 | Putative threonine synthase. | 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family. | 0.906 |
BDI_0259 | BDI_0506 | BDI_0259 | BDI_0506 | Putative threonine synthase. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.560 |
BDI_0259 | BDI_1377 | BDI_0259 | BDI_1377 | Putative threonine synthase. | Prephenate dehydratase. | 0.477 |
BDI_0259 | pdxB | BDI_0259 | BDI_2825 | Putative threonine synthase. | Erythronate-4-phosphate dehydrogenase, putative; Catalyzes the oxidation of erythronate-4-phosphate to 3- hydroxy-2-oxo-4-phosphonooxybutanoate. | 0.560 |
BDI_0259 | serC | BDI_0259 | BDI_0505 | Putative threonine synthase. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.937 |
BDI_0506 | BDI_0259 | BDI_0506 | BDI_0259 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Putative threonine synthase. | 0.560 |
BDI_0506 | BDI_0507 | BDI_0506 | BDI_0507 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Conserved hypothetical protein. | 0.685 |
BDI_0506 | serC | BDI_0506 | BDI_0505 | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.994 |
BDI_0507 | BDI_0506 | BDI_0507 | BDI_0506 | Conserved hypothetical protein. | D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.685 |
BDI_0507 | serC | BDI_0507 | BDI_0505 | Conserved hypothetical protein. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.640 |
BDI_0970 | serC | BDI_0970 | BDI_0505 | Putative cysteine synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.917 |
BDI_1107 | serC | BDI_1107 | BDI_0505 | Phosphoserine phosphatase. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.963 |
BDI_1377 | BDI_0259 | BDI_1377 | BDI_0259 | Prephenate dehydratase. | Putative threonine synthase. | 0.477 |
BDI_1377 | BDI_1379 | BDI_1377 | BDI_1379 | Prephenate dehydratase. | Putative phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase. | 0.998 |
BDI_1377 | aroA | BDI_1377 | BDI_3146 | Prephenate dehydratase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.458 |
BDI_1377 | serC | BDI_1377 | BDI_0505 | Prephenate dehydratase. | Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.635 |
BDI_1379 | BDI_1377 | BDI_1379 | BDI_1377 | Putative phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase. | Prephenate dehydratase. | 0.998 |
BDI_1379 | aroA | BDI_1379 | BDI_3146 | Putative phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.966 |
page 1 of 2