Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDI_0615 | BDI_0617 | BDI_0615 | BDI_0617 | long-chain-fatty-acid-CoA ligase, putative. | Hypothetical protein. | 0.564 |
BDI_0615 | mfd | BDI_0615 | BDI_0616 | long-chain-fatty-acid-CoA ligase, putative. | Putative transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.704 |
BDI_0617 | BDI_0615 | BDI_0617 | BDI_0615 | Hypothetical protein. | long-chain-fatty-acid-CoA ligase, putative. | 0.564 |
BDI_0617 | BDI_0733 | BDI_0617 | BDI_0733 | Hypothetical protein. | Conserved hypothetical protein. | 0.516 |
BDI_0617 | BDI_1022 | BDI_0617 | BDI_1022 | Hypothetical protein. | Proline dehydrogenase, alpha subunit. | 0.574 |
BDI_0617 | BDI_1525 | BDI_0617 | BDI_1525 | Hypothetical protein. | Putative nitroreductase. | 0.484 |
BDI_0617 | BDI_1568 | BDI_0617 | BDI_1568 | Hypothetical protein. | Conserved hypothetical protein. | 0.481 |
BDI_0617 | BDI_1760 | BDI_0617 | BDI_1760 | Hypothetical protein. | Malonyl CoA-acyl carrier protein transacylase. | 0.562 |
BDI_0617 | BDI_2171 | BDI_0617 | BDI_2171 | Hypothetical protein. | Conserved hypothetical protein. | 0.534 |
BDI_0617 | BDI_2827 | BDI_0617 | BDI_2827 | Hypothetical protein. | Putative 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.582 |
BDI_0617 | fabZ | BDI_0617 | BDI_2105 | Hypothetical protein. | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily. | 0.473 |
BDI_0617 | mfd | BDI_0617 | BDI_0616 | Hypothetical protein. | Putative transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. | 0.560 |
BDI_0733 | BDI_0617 | BDI_0733 | BDI_0617 | Conserved hypothetical protein. | Hypothetical protein. | 0.516 |
BDI_0733 | BDI_1022 | BDI_0733 | BDI_1022 | Conserved hypothetical protein. | Proline dehydrogenase, alpha subunit. | 0.985 |
BDI_0733 | BDI_1525 | BDI_0733 | BDI_1525 | Conserved hypothetical protein. | Putative nitroreductase. | 0.681 |
BDI_1022 | BDI_0617 | BDI_1022 | BDI_0617 | Proline dehydrogenase, alpha subunit. | Hypothetical protein. | 0.574 |
BDI_1022 | BDI_0733 | BDI_1022 | BDI_0733 | Proline dehydrogenase, alpha subunit. | Conserved hypothetical protein. | 0.985 |
BDI_1022 | BDI_1525 | BDI_1022 | BDI_1525 | Proline dehydrogenase, alpha subunit. | Putative nitroreductase. | 0.470 |
BDI_1022 | BDI_1568 | BDI_1022 | BDI_1568 | Proline dehydrogenase, alpha subunit. | Conserved hypothetical protein. | 0.451 |
BDI_1022 | BDI_2827 | BDI_1022 | BDI_2827 | Proline dehydrogenase, alpha subunit. | Putative 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. | 0.422 |
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