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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDI_0809Conserved hypothetical protein, putative N-acetylmuramoyl-L-alanine amidase. (329 aa)    
Predicted Functional Partners:
BDI_3970
Conserved hypothetical protein, putative N-acetylmuramoyl-L-alanine amidase amiA.
     
  0.900
BDI_0810
Hypothetical protein.
       0.562
BDI_0400
Conserved hypothetical protein.
    
   0.531
BDI_0808
Two-component system response regulator.
  
  
 0.494
BDI_0957
Conserved hypothetical protein.
  
   0.486
BDI_3603
Rhomboid family protein.
  
   0.486
BDI_3604
Rhomboid family protein.
  
   0.486
BDI_3737
Outer membrane protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
    0.478
BDI_0811
Cold shock protein, putative DNA-binding protein.
 
    0.470
BDI_3463
Hypothetical protein.
  
     0.464
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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