Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_0901Conserved hypothetical protein. (1223 aa)    
Predicted Functional Partners:
BDI_0893
Conserved hypothetical protein, putative viral A-type inclusion protein.
 
  
 0.817
BDI_0902
Hypothetical protein.
       0.718
BDI_1732
Conserved hypothetical protein, putative non-specific DNA-binding protein.
  
     0.556
BDI_0903
Hypothetical protein.
       0.547
BDI_0904
Conserved hypothetical protein, putative phage protein.
       0.540
BDI_2871
N-acetylmuramoyl-L-alanine amidase.
 
    0.520
BDI_0905
Hypothetical protein.
       0.515
BDI_0877
Putative DNA methylase.
  
     0.509
BDI_0538
Putative lipoprotein protein.
  
  
 0.500
BDI_2467
Glycoside hydrolase family 28; Related to polygalacturonases.
  
   0.494
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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