Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_0959Putative periplasmic protein. (443 aa)    
Predicted Functional Partners:
BDI_0958
Conserved hypothetical protein.
 
     0.955
BDI_0960
Putative alginate O-acetyltransferase; Belongs to the membrane-bound acyltransferase family.
     0.940
BDI_3486
Conserved hypothetical protein.
  
     0.594
BDI_3098
Putative membrane protein involved in the export of O-antigen and teichoic acid.
 
     0.579
BDI_1453
Conserved hypothetical protein.
  
     0.566
BDI_2997
Conserved hypothetical protein.
  
     0.555
BDI_0957
Conserved hypothetical protein.
     
 0.533
BDI_1486
Alginate O-acetylation protein, putative alginate o-acetyltransferase; Belongs to the membrane-bound acyltransferase family.
 
     0.528
BDI_0632
Conserved hypothetical protein.
  
     0.521
BDI_2918
Conserved hypothetical protein.
  
     0.506
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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