Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
BDI_1327 | BDI_1328 | Putative peptidase. | D-threonine aldolase, metal-activated pyridoxal enzyme. | 0.918 |
BDI_1327 | BDI_1329 | Putative peptidase. | Putative translation initiation inhibitor. | 0.903 |
BDI_1327 | BDI_1330 | Putative peptidase. | Hypothetical protein. | 0.576 |
BDI_1327 | BDI_1331 | Putative peptidase. | H+/gluconate symporter and related permease. | 0.732 |
BDI_1327 | BDI_1332 | Putative peptidase. | Putative ABC transport system, membrane protein. | 0.413 |
BDI_1327 | BDI_1333 | Putative peptidase. | Putative ABC transporter permease protein. | 0.413 |
BDI_1328 | BDI_1327 | D-threonine aldolase, metal-activated pyridoxal enzyme. | Putative peptidase. | 0.918 |
BDI_1328 | BDI_1329 | D-threonine aldolase, metal-activated pyridoxal enzyme. | Putative translation initiation inhibitor. | 0.947 |
BDI_1328 | BDI_1330 | D-threonine aldolase, metal-activated pyridoxal enzyme. | Hypothetical protein. | 0.686 |
BDI_1328 | BDI_1331 | D-threonine aldolase, metal-activated pyridoxal enzyme. | H+/gluconate symporter and related permease. | 0.788 |
BDI_1328 | BDI_1332 | D-threonine aldolase, metal-activated pyridoxal enzyme. | Putative ABC transport system, membrane protein. | 0.497 |
BDI_1328 | BDI_1333 | D-threonine aldolase, metal-activated pyridoxal enzyme. | Putative ABC transporter permease protein. | 0.497 |
BDI_1329 | BDI_1327 | Putative translation initiation inhibitor. | Putative peptidase. | 0.903 |
BDI_1329 | BDI_1328 | Putative translation initiation inhibitor. | D-threonine aldolase, metal-activated pyridoxal enzyme. | 0.947 |
BDI_1329 | BDI_1330 | Putative translation initiation inhibitor. | Hypothetical protein. | 0.690 |
BDI_1329 | BDI_1331 | Putative translation initiation inhibitor. | H+/gluconate symporter and related permease. | 0.751 |
BDI_1329 | BDI_1332 | Putative translation initiation inhibitor. | Putative ABC transport system, membrane protein. | 0.497 |
BDI_1329 | BDI_1333 | Putative translation initiation inhibitor. | Putative ABC transporter permease protein. | 0.497 |
BDI_1330 | BDI_1327 | Hypothetical protein. | Putative peptidase. | 0.576 |
BDI_1330 | BDI_1328 | Hypothetical protein. | D-threonine aldolase, metal-activated pyridoxal enzyme. | 0.686 |
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