STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDI_1489Putative collagenase. (614 aa)    
Predicted Functional Partners:
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
  
    0.799
BDI_1488
Peptidyl-prolyl cis-trans isomerase, cyclophilin-type.
       0.648
BDI_3303
O-methyltransferase.
  
  
 0.552
BDI_3328
Conserved hypothetical protein.
  
  
 0.552
BDI_3155
Uridine kinase.
  
    0.430
BDI_1491
Outer membrane protein oprM precursor.
       0.419
BDI_1492
Putative aminoglycoside efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.419
BDI_1493
Acriflavine resistance protein A precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.419
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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