Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_1966Putative ABC transporter permease component. (420 aa)    
Predicted Functional Partners:
BDI_1964
ABC transporter ATP-binding protein.
 
 
 0.911
BDI_1965
ABC transporter permease.
 
  
0.851
BDI_1637
ABC transporter, ATP-binding protein.
 
 
 0.836
BDI_3354
Putative ABC transporter ATP-binding protein.
 
 
 0.835
BDI_3577
ABC transporter, ATP-binding protein.
 
 
 0.826
BDI_1971
ABC transporter permease.
 
   0.806
BDI_1969
ABC transporter permease.
 
  
 0.795
BDI_1959
ABC transporter permease.
 
  
 0.754
BDI_1957
ABC transporter permease.
 
  
 0.723
BDI_1948
Two-component system sensor histidine kinase.
 
    0.712
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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