Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_2129Conserved hypothetical protein. (327 aa)    
Predicted Functional Partners:
BDI_2128
Conserved hypothetical protein.
 
 
 0.940
BDI_2127
Excisionase in mobilizable transposon, xis protein.
 
   
 0.892
BDI_2123
Transposase in mobilizable transposon, tnpA protein.
 
   
 0.747
BDI_3897
Conserved hypothetical protein.
  
     0.630
der
GTP-binding protein, Era/ThdF family; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.607
BDI_0360
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.540
BDI_2795
Putative lipoprotein.
  
   
 0.504
BDI_2124
Integrase; Belongs to the 'phage' integrase family.
 
   
 0.499
BDI_2798
Conserved hypothetical protein.
  
     0.481
BDI_1221
Conserved hypothetical protein.
  
     0.478
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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