Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_2156Conserved hypothetical protein. (421 aa)    
Predicted Functional Partners:
BDI_2157
Putative DNA-binding protein.
 
  
 0.954
BDI_2713
Hypothetical protein.
   
 
 0.810
BDI_0306
Conserved hypothetical protein.
  
     0.622
BDI_0074
Outer membrane phospholipase A.
  
     0.583
BDI_2155
Hypothetical protein.
       0.561
BDI_1256
Clindamycin resistance transfer factor BtgB.
 
     0.512
BDI_3245
Transposase; Belongs to the 'phage' integrase family.
  
     0.434
BDI_2229
Transposase; Belongs to the 'phage' integrase family.
  
     0.432
BDI_2158
Hypothetical protein.
       0.424
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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