Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_2188Conserved hypothetical protein. (227 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family.
       0.773
BDI_3863
Conserved hypothetical protein.
  
   
 0.770
BDI_3877
Type I restriction enzyme, M subunit.
 
   
 0.759
BDI_3879
Conserved hypothetical protein.
  
     0.737
BDI_3880
Conserved hypothetical protein.
 
     0.725
BDI_2245
Putative peptidyl-prolyl cis-trans isomerase, FKBP-type.
  
 
  0.716
BDI_0342
Putative transmembrane acyltransferase protein.
  
     0.711
BDI_2045
Hypothetical protein.
  
     0.708
BDI_3895
Hypothetical protein.
  
     0.706
BDI_2658
Putative vitamin B12 receptor precursor.
  
     0.690
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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