STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDI_2225Putative LPS biosynthesis related glycosyltransferase. (373 aa)    
Predicted Functional Partners:
BDI_2223
Putative tyrosine-protein kinase ptk.
 
  
 0.827
BDI_2224
Polysaccharide export protein, BexD/CtrA/VexA family.
 
  
 0.805
BDI_2222
Capsular polysaccharide biosythesis protein, putative.
     
 0.746
BDI_2221
Hypothetical protein.
       0.725
BDI_3384
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
 
 
 0.649
BDI_2226
Putative transcriptional regulator UpxY-like protein.
  
  
 0.616
BDI_2227
Hypothetical protein.
       0.567
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
  
  
 0.562
murF
UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 
 0.529
BDI_0042
Glycosyltransferase family 26; Related to beta-N-acetyl mannosaminuronic acid transferase; Belongs to the glycosyltransferase 26 family.
 
 
 
 0.525
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.