node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDI_2397 | def | BDI_2397 | BDI_0656 | FKBP-type peptidyl-prolyl cis-transisomerase. | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.943 |
BDI_2397 | rplC | BDI_2397 | BDI_2380 | FKBP-type peptidyl-prolyl cis-transisomerase. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.948 |
BDI_2397 | rplM | BDI_2397 | BDI_3487 | FKBP-type peptidyl-prolyl cis-transisomerase. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.942 |
BDI_2397 | rplW | BDI_2397 | BDI_2378 | FKBP-type peptidyl-prolyl cis-transisomerase. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.979 |
BDI_2397 | rplX | BDI_2397 | BDI_2369 | FKBP-type peptidyl-prolyl cis-transisomerase. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.967 |
BDI_2397 | rpmC | BDI_2397 | BDI_2372 | FKBP-type peptidyl-prolyl cis-transisomerase. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.980 |
BDI_2397 | rpsB | BDI_2397 | BDI_3489 | FKBP-type peptidyl-prolyl cis-transisomerase. | Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.947 |
BDI_2397 | rpsD | BDI_2397 | BDI_2355 | FKBP-type peptidyl-prolyl cis-transisomerase. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.942 |
BDI_2397 | rpsG | BDI_2397 | BDI_2383 | FKBP-type peptidyl-prolyl cis-transisomerase. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.991 |
BDI_2397 | rpsJ | BDI_2397 | BDI_2381 | FKBP-type peptidyl-prolyl cis-transisomerase. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.942 |
def | BDI_2397 | BDI_0656 | BDI_2397 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | FKBP-type peptidyl-prolyl cis-transisomerase. | 0.943 |
def | rplC | BDI_0656 | BDI_2380 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.920 |
def | rplM | BDI_0656 | BDI_3487 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.928 |
def | rplW | BDI_0656 | BDI_2378 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.921 |
def | rplX | BDI_0656 | BDI_2369 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.952 |
def | rpmC | BDI_0656 | BDI_2372 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.920 |
def | rpsB | BDI_0656 | BDI_3489 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.926 |
def | rpsD | BDI_0656 | BDI_2355 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.923 |
def | rpsG | BDI_0656 | BDI_2383 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.931 |
def | rpsJ | BDI_0656 | BDI_2381 | Polypeptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.922 |