Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDI_0826 | BDI_3170 | BDI_0826 | BDI_3170 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.553 |
BDI_1139 | BDI_3170 | BDI_1139 | BDI_3170 | Putative O-succinylbenzoate--CoA ligase. | Conserved hypothetical protein. | 0.572 |
BDI_1139 | rplF | BDI_1139 | BDI_2365 | Putative O-succinylbenzoate--CoA ligase. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.737 |
BDI_2505 | BDI_3170 | BDI_2505 | BDI_3170 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.562 |
BDI_2772 | BDI_3170 | BDI_2772 | BDI_3170 | Putative long-chain-fatty-acid--CoA ligase. | Conserved hypothetical protein. | 0.572 |
BDI_2772 | rplF | BDI_2772 | BDI_2365 | Putative long-chain-fatty-acid--CoA ligase. | Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.737 |
BDI_3169 | BDI_3170 | BDI_3169 | BDI_3170 | RNA polymerase sigma-54. | Conserved hypothetical protein. | 0.794 |
BDI_3169 | BDI_3176 | BDI_3169 | BDI_3176 | RNA polymerase sigma-54. | Conserved hypothetical protein. | 0.657 |
BDI_3169 | gcvH | BDI_3169 | BDI_3171 | RNA polymerase sigma-54. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.805 |
BDI_3169 | ispG | BDI_3169 | BDI_3173 | RNA polymerase sigma-54. | Putative GcpE terpenoid biosynthesis protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.536 |
BDI_3169 | purE | BDI_3169 | BDI_3172 | RNA polymerase sigma-54. | Phosphoribosylaminoimidazole carboxylase, PurE protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). | 0.779 |
BDI_3170 | BDI_0826 | BDI_3170 | BDI_0826 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.553 |
BDI_3170 | BDI_1139 | BDI_3170 | BDI_1139 | Conserved hypothetical protein. | Putative O-succinylbenzoate--CoA ligase. | 0.572 |
BDI_3170 | BDI_2505 | BDI_3170 | BDI_2505 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.562 |
BDI_3170 | BDI_2772 | BDI_3170 | BDI_2772 | Conserved hypothetical protein. | Putative long-chain-fatty-acid--CoA ligase. | 0.572 |
BDI_3170 | BDI_3169 | BDI_3170 | BDI_3169 | Conserved hypothetical protein. | RNA polymerase sigma-54. | 0.794 |
BDI_3170 | BDI_3176 | BDI_3170 | BDI_3176 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.660 |
BDI_3170 | gcvH | BDI_3170 | BDI_3171 | Conserved hypothetical protein. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.756 |
BDI_3170 | ispG | BDI_3170 | BDI_3173 | Conserved hypothetical protein. | Putative GcpE terpenoid biosynthesis protein; Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family. | 0.549 |
BDI_3170 | purE | BDI_3170 | BDI_3172 | Conserved hypothetical protein. | Phosphoribosylaminoimidazole carboxylase, PurE protein; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR). | 0.752 |
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