Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_3196Conserved hypothetical protein. (289 aa)    
Predicted Functional Partners:
BDI_3195
Conserved hypothetical protein.
 
    0.953
BDI_3197
Topoisomerase IV subunit A.
       0.813
BDI_0211
Putative lipoprotein.
  
     0.752
BDI_2114
Conserved hypothetical protein.
  
     0.716
BDI_0341
Conserved hypothetical protein.
  
     0.715
BDI_1394
Conserved hypothetical protein.
  
    0.710
BDI_1221
Conserved hypothetical protein.
  
     0.699
BDI_2166
Conserved hypothetical protein.
  
     0.696
BDI_1934
Conserved hypothetical protein.
  
     0.690
BDI_0176
Conserved hypothetical protein.
  
     0.689
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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