Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_3203Putative transmembrane protein and transcriptional regulator. (264 aa)    
Predicted Functional Partners:
BDI_3204
Conserved hypothetical protein.
 
    0.928
BDI_3356
Two-component system sensor histidine kinase.
 
 
 0.788
BDI_0536
Putative two-component system sensor histidine kinase.
 
 
 0.778
BDI_1952
Two-component system sensor histidine kinase.
 
 
 0.767
BDI_2689
Putative two-component system sensor histidine kinase.
 
 
 0.764
BDI_2344
Putative two-component system sensor protein histidine kinase.
 
 
 0.740
BDI_2725
Putative two-component regulator sensor kinase.
 
 
 0.732
BDI_1951
Two-component system response regulator protein.
  
     0.728
BDI_0804
Putative two-component system sensor protein histidine kinase.
 
 
 0.718
BDI_0703
Putative two-component system sensor histidine kinase.
 
 
 0.702
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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