Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDI_0483 | BDI_1073 | BDI_0483 | BDI_1073 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Putative aspartate decarboxylase. | 0.905 |
BDI_0483 | BDI_2808 | BDI_0483 | BDI_2808 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Alanine dehydrogenase. | 0.917 |
BDI_0483 | BDI_3384 | BDI_0483 | BDI_3384 | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.949 |
BDI_1073 | BDI_0483 | BDI_1073 | BDI_0483 | Putative aspartate decarboxylase. | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.905 |
BDI_1073 | BDI_2808 | BDI_1073 | BDI_2808 | Putative aspartate decarboxylase. | Alanine dehydrogenase. | 0.905 |
BDI_1073 | BDI_3384 | BDI_1073 | BDI_3384 | Putative aspartate decarboxylase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.838 |
BDI_2485 | BDI_3384 | BDI_2485 | BDI_3384 | Cell division protein FtsQ. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.867 |
BDI_2485 | ddl | BDI_2485 | BDI_2675 | Cell division protein FtsQ. | D-alanine--D-alanine ligase; Cell wall formation. | 0.802 |
BDI_2485 | mraY | BDI_2485 | BDI_2490 | Cell division protein FtsQ. | phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. | 0.844 |
BDI_2485 | murD | BDI_2485 | BDI_2489 | Cell division protein FtsQ. | UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. | 0.969 |
BDI_2485 | murE | BDI_2485 | BDI_2491 | Cell division protein FtsQ. | Probable UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. | 0.884 |
BDI_2485 | murF | BDI_2485 | BDI_3366 | Cell division protein FtsQ. | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate-D-alanyl-D-alanyl ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. | 0.650 |
BDI_2808 | BDI_0483 | BDI_2808 | BDI_0483 | Alanine dehydrogenase. | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.917 |
BDI_2808 | BDI_1073 | BDI_2808 | BDI_1073 | Alanine dehydrogenase. | Putative aspartate decarboxylase. | 0.905 |
BDI_2808 | BDI_3384 | BDI_2808 | BDI_3384 | Alanine dehydrogenase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.949 |
BDI_3384 | BDI_0483 | BDI_3384 | BDI_0483 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine dehydrogenase; Belongs to the AlaDH/PNT family. | 0.949 |
BDI_3384 | BDI_1073 | BDI_3384 | BDI_1073 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Putative aspartate decarboxylase. | 0.838 |
BDI_3384 | BDI_2485 | BDI_3384 | BDI_2485 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Cell division protein FtsQ. | 0.867 |
BDI_3384 | BDI_2808 | BDI_3384 | BDI_2808 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Alanine dehydrogenase. | 0.949 |
BDI_3384 | BDI_3385 | BDI_3384 | BDI_3385 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Conserved hypothetical protein. | 0.839 |
page 1 of 3