Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDI_3402Conserved hypothetical protein. (471 aa)    
Predicted Functional Partners:
BDI_3401
Putative TonB-linked outer membrane receptor.
 
 
 0.988
BDI_3404
Conserved hypothetical protein, putative iron uptake factor.
 
  
 0.883
BDI_3403
Conserved hypothetical protein.
       0.775
BDI_1530
Tetratricopeptide repeat family protein.
 
   
 0.712
BDI_3337
Putative outer membrane protein, probably involved in nutrient binding.
  
     0.688
BDI_2896
Conserved hypothetical protein.
  
     0.681
BDI_0500
Putative outer membrane protein probably involved in nutrient binding.
  
  
 0.653
BDI_1105
Putative outer membrane receptor protein involved in Fe transport.
  
     0.643
BDI_0499
Conserved hypothetical protein.
  
     0.641
BDI_3473
Putative TonB-dependent receptor.
  
     0.639
Your Current Organism:
Parabacteroides distasonis
NCBI taxonomy Id: 435591
Other names: P. distasonis ATCC 8503, Parabacteroides distasonis ATCC 8503, Parabacteroides distasonis str. ATCC 8503, Parabacteroides distasonis strain ATCC 8503
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