STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG47187.1L-alanine-DL-glutamate epimerase. (338 aa)    
Predicted Functional Partners:
SFG99661.1
6-phosphogluconate dehydrogenase; Belongs to the 6-phosphogluconate dehydrogenase family.
    
  0.840
SFG47210.1
Zinc carboxypeptidase.
       0.548
SFG91208.1
O-succinylbenzoic acid--CoA ligase.
 
 
  0.417
SFG37513.1
3-oxoacid CoA-transferase subunit B.
  
  
 0.410
SFG37534.1
3-oxoacid CoA-transferase subunit A.
  
  
 0.410
Your Current Organism:
Algoriphagus hitonicola
NCBI taxonomy Id: 435880
Other names: A. hitonicola, Algoriphagus hitonicola Copa-Patino et al. 2008 emend. Kim et al. 2014, CCM 7449, CECT 7267, DSM 19315, strain 7-UAH
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